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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTCGACCTTACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAGgtcaggttttgggcacccgcgggctggtcgctaaagcattgtactgacttccatcatgattgcccgcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97912
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23366884|gb|BU654703.1|BU654703
EST:     TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAG                         GCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
genomic: TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAGgtcaggtttt ... gcccgcacagGCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
EST: gi|14239551|gb|BG858367.1|BG858367
EST:     TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAG                         GCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
genomic: TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAGgtcaggtttt ... gcccgcacagGCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
EST: gi|14228754|gb|BG847570.1|BG847570
EST:     TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAG                         GCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
genomic: TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAGgtcaggtttt ... gcccgcacagGCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
EST: gi|22061741|gb|BQ814430.1|BQ814430
EST:     TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAG                         GCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
genomic: TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAGgtcaggtttt ... gcccgcacagGCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
EST: gi|10789051|gb|AV626771.1|AV626771
EST:     TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAG                         GCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
genomic: TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAGgtcaggtttt ... gcccgcacagGCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
EST: gi|14242045|gb|BG860861.1|BG860861
EST:     TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAG                         GCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC
genomic: TACAGCTAACCGCCTGCGCACCATCGACCCGCGCATTCTTGGACTGCAAGgtcaggtttt ... gcccgcacagGCCTGCGGAGCATAAACTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCC