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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgtgggtgtctatgctgtggcgtccatttgcagtgcttcactgtgtcgcacactgtgggttcttagtccccgaggcaccttgccacgcttccgccaccctgtgagacacatctgactcctcttgttccccgccgcctccctttccgcctccccgatcccttgtcgtatcaatccgctgtggaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAGCTGTATGTGGCTAGCAACAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97912
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23366884|gb|BU654703.1|BU654703
EST:     CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAG                         ATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
genomic: CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAGgttagtgtgg ... gaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
EST: gi|14239551|gb|BG858367.1|BG858367
EST:     CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAG                         ATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
genomic: CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAGgttagtgtgg ... gaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
EST: gi|14228754|gb|BG847570.1|BG847570
EST:     CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAG                         ATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
genomic: CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAGgttagtgtgg ... gaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
EST: gi|22061741|gb|BQ814430.1|BQ814430
EST:     CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAG                         ATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
genomic: CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAGgttagtgtgg ... gaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
EST: gi|10789051|gb|AV626771.1|AV626771
EST:     CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAG                         ATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
genomic: CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAGgttagtgtgg ... gaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
EST: gi|14242045|gb|BG860861.1|BG860861
EST:     CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAG                         ATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG
genomic: CGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACAACCAGgttagtgtgg ... gaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccctttccgcctccccgatcccttgtcgtatcaatccgctgtggaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAGCTGTATGTGGCTAGCAACAAG
                              tatcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtgtgggtgtctatgctgtggcgtccatttgcagtgcttcactgtgtcgcacactgtgggttcttagtccccgaggcaccttgccacgcttccgccaccctgtgagacacatctgactcctcttgttccccgccgcctccctttccgcctccccgatcccttgtcgtatcaatccgctgtggaaccaccagATCCGGAACCTGCTGCCTCTTGCGGACCTGGATTCCACCAAGCTAGAGGAGCTGTATGTGGCTAGCAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT