1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...accacctcacttgtcatcgttgcaacccgccctgtttcgccccttcgccacaccgcaccataaccttacctcttcacacacgcgcccgcacccgcaacagGGCAAGCTGAACGGTCTGGCTGTGCGTGTGCCGCTGACCAACGCCTCCATCACCGACTGCGTGTTCGACGTGAAGCGCAAGACGACCGAGGAGGAGGTCA
species | Chlamydomonas reinhardtii |
transcript | EDO97261 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCCACGGGCAGCGCCACCGCCATCGCGCTCATCTTCCCCGAGCTCAAA GGCAAGCTGAACGGTCCTGGCTGTGCCTGGGCCCGCCTGACCAACCCCCTC
genomic: CCTCCACGGGCAGCGCCACCGCCATCGCGCTCATCTTCCCCGAGCTCAAGgtgggtttgg ... cccgcaacagGGCAAGCTGAACGGTC-TGGCTGTGCGTGTGCC-GC-TGACCAACGCC-TC
cgccacaccgcaccataaccttacctcttcacacacgcgcccgcacccgcaacagGGCAAGCTGAACGGTCTGGCTGTGCGTGTGCCGCTGACCAACGCCTCCATCACCGACTGCGTGTTCGACGTGAAGCGCAAGACGACCGAGGAGGAGGTCA
accttac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accacctcacttgtcatcgttgcaacccgccctgtttcgccccttcgccacaccgcaccataaccttacctcttcacacacgcgcccgcacccgcaacagGGCAAGCTGAACGGTCTGGCTGTGCGTGTGCCGCTGACCAACGCCTCCATCACCGACTGCGTGTTCGACGTGAAGCGCAAGACGACCGAGGAGGAGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - cctcact
- - - - - - - - - - -gcaaccc
- - - - - - - - - - - - - - - - - - - - - - -cgccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcgc