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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttgtgagggggccgggggggagggtgttgggggcggaagggcagtcaactcactcctacaggattctggtcctggctgcgattaacgcacgtgtgacacgcccacgtggtaatgcccacatggccacacacacaatacacacatgtatagGTGATCCACGAGAAGCTGGGCATTGACCGCGGCTGCATCACCACCATTCACAACCTCACCAACACCCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97261
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10778680|gb|AV635360.1|AV635360
EST:     TCGTGACCGCCGCCTCCTGCACCACCAACTGCCTGGCGCCCGTGGTCAAG                         GTGATCCACGAGAAGCTGGGCATTGACCGCGGCT
genomic: TCGTGACCGCCGCCTCCTGCACCACCAACTGCCTGGCGCCCGTGGTCAAGgtgcttgtga ... acatgtatagGTGATCCACGAGAAGCTGGGCATTGACCGCGGCT
EST: gi|10769700|gb|AV620525.1|AV620525
EST:     TCGTGACCGCCGCCTCCTGCACCACCAACTGCCTGGCGCCCGTGGTCAAG                         GTGATCCACGAGAAGCTGGGC
genomic: TCGTGACCGCCGCCTCCTGCACCACCAACTGCCTGGCGCCCGTGGTCAAGgtgcttgtga ... acatgtatagGTGATCCACGAGAAGCTGGGC
EST: gi|239841129|gb|GR282819.1|GR282819
EST:     TCGTGACCGCCGCCTCCTGCACCACCAACTGCCTGGCGCCCGTGGTCAAG                         GTGATCCACGAGAAGCTGGGCATTGACCGCGGCTGCATCACCACCATTCAC
genomic: TCGTGACCGCCGCCTCCTGCACCACCAACTGCCTGGCGCCCGTGGTCAAGgtgcttgtga ... acatgtatagGTGATCCACGAGAAGCTGGGCATTGACCGCGGCTGCATCACCACCATTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacgcccacgtggtaatgcccacatggccacacacacaatacacacatgtatagGTGATCCACGAGAAGCTGGGCATTGACCGCGGCTGCATCACCACCATTCACAACCTCACCAACACCCAG
                                               atgtata  TA-rich tract