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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcggcgcggcgccgaacgcctcaatcttgacatttagtggtctaaatggtgtggagatatgggtgcccggttcagagcgcatgcgcgactgtcgcactgatagccggtggtgcacgcgcagGTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCGTGCACCTGAACGACATCACCGCCATTGAGTCTGTGGCGTACCTGATCAA

Basic information

species Chlamydomonas reinhardtii
transcript EDO97261
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10792113|gb|AV629479.1|AV629479
EST:     GCACGTCATGGCGCCAAAGAAGGTTCTTCTCAATGGATGCGGGCGCATCG                         GTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCG
genomic: GCACGTCATGGCGCCAAAGAAGGTTCTTCTCAATGGATGCGGGCGCATCGgtgagcggcg ... gcacgcgcagGTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCG
EST: gi|16429500|gb|BI994726.1|BI994726
EST:     GCACGTCATGGCGCCAAAGAAGGTTCTTCTCAATGGATGCGGGCGCATCG                         GTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCG
genomic: GCACGTCATGGCGCCAAAGAAGGTTCTTCTCAATGGATGCGGGCGCATCGgtgagcggcg ... gcacgcgcagGTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCG
EST: gi|239841129|gb|GR282819.1|GR282819
EST:     ATGGCGCCAAAGAAGGTTCTTCTCAATGGATGCGGGCGCATCG                         GTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCG
genomic: ATGGCGCCAAAGAAGGTTCTTCTCAATGGATGCGGGCGCATCGgtgagcggcg ... gcacgcgcagGTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCG
EST: gi|239841133|gb|GR282823.1|GR282823
EST:     GCACGTCATGGCGCCAAAGAAGGTTCTTCTCAATGGATGCGGGCGCATCG                         GTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCG
genomic: GCACGTCATGGCGCCAAAGAAGGTTCTTCTCAATGGATGCGGGCGCATCGgtgagcggcg ... gcacgcgcagGTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccggttcagagcgcatgcgcgactgtcgcactgatagccggtggtgcacgcgcagGTCGCTTGGCTTTCCGTGTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCGTGCACCTGAACGACATCACCGCCATTGAGTCTGTGGCGTACCTGATCAA
                            cactgat  putative branch site (score: 3)