1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acacccatacaacggtgcgcaagctactgaaccaagcattatgcccacccccgcatccacgtctccatctcacctcgtctcttctcgcctccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGCGTGTTCCTGACCCGCGCCGCCATCGCGCCGCACTTTGACGCCCTGGGCG
species | Chlamydomonas reinhardtii |
transcript | EDO97261 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGG ATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGCEST: gi|16429500|gb|BI994726.1|BI994726
genomic: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGGgtgagcgggc ... ccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGC
EST: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGG ATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGCEST: gi|10778680|gb|AV635360.1|AV635360
genomic: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGGgtgagcgggc ... ccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGC
EST: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGG ATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGCEST: gi|10769700|gb|AV620525.1|AV620525
genomic: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGGgtgagcgggc ... ccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGC
EST: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGG ATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGCEST: gi|239841129|gb|GR282819.1|GR282819
genomic: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGGgtgagcgggc ... ccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGC
EST: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGG ATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGCEST: gi|239841133|gb|GR282823.1|GR282823
genomic: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGGgtgagcgggc ... ccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGC
EST: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGG ATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGC
genomic: GGGACCGCGTGGACCGCATCCCCTACACCAACTGCAAGTCCATTGAGGGGgtgagcgggc ... ccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGC
cacccccgcatccacgtctccatctcacctcgtctcttctcgcctccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGCGTGTTCCTGACCCGCGCCGCCATCGCGCCGCACTTTGACGCCCTGGGCG
atctcac putative branch site (score: 3)
cgtctccatctcacct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacccatacaacggtgcgcaagctactgaaccaagcattatgcccacccccgcatccacgtctccatctcacctcgtctcttctcgcctccccccccagATCAAGCTGGCCGACGGCGTGGCCGTGGACCAGGCGTGGGAGTGCACCGGCGTGTTCCTGACCCGCGCCGCCATCGCGCCGCACTTTGACGCCCTGGGCG
acaccca
- - - - - - - - - - - - - - - - caagcat
- - - - - - - - - - - - - - - - - - - - atgccca
- - - - - - - - - - - - - - - - - - - - - - - - - - -catccac