Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCGTGCACCTGAACGACATCACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACGgtgcgttcttggcggatccatagagggcagggggcgagggacgaagggcgggggaagcttggcagtggcagcacgcagcacacgggtccgatcagccggc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97261
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10792113|gb|AV629479.1|AV629479
EST:     CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACG                         GCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
genomic: CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACGgtgcgttctt ... gaccatgcagGCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
EST: gi|16429500|gb|BI994726.1|BI994726
EST:     CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACG                         GCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
genomic: CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACGgtgcgttctt ... gaccatgcagGCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
EST: gi|10778680|gb|AV635360.1|AV635360
EST:     CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACG                         GCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
genomic: CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACGgtgcgttctt ... gaccatgcagGCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
EST: gi|10769700|gb|AV620525.1|AV620525
EST:     CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACG                         GCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
genomic: CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACGgtgcgttctt ... gaccatgcagGCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
EST: gi|239841129|gb|GR282819.1|GR282819
EST:     CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACG                         GCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
genomic: CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACGgtgcgttctt ... gaccatgcagGCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
EST: gi|239841133|gb|GR282823.1|GR282823
EST:     CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACG                         GCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG
genomic: CACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACGgtgcgttctt ... gaccatgcagGCACCTGGGGCCCGGACGTGAGCGTGGATGGCAACTGCATTGTGGTTAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGCGTGGGCCCAGCAGGACGTGTTCCAGTTCGTGCACCTGAACGACATCACCGCCATTGAGTCTGTGGCGTACCTGATCAAATACGACTCCGTGCACGgtgcgttcttggcggatccatagagggcagggggcgagggacgaagggcgggggaagcttggcagtggcagcacgcagcacacgggtccgatcagccggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcacac