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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCGCGATTCAAGGCCAGCTTCGTCTTGAGCGACGCGACTACATGATGTTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaattgttcaccacagcgttttgctgttgttgtaccatatttttgccgcgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97185
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14231773|gb|BG850589.1|BG850589
EST:     TTGTGGCGAGATATTGAGGCGAATTGNGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGA
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGA
EST: gi|34994750|gb|CF568667.1|CF568667
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|34984266|gb|CF558183.1|CF558183
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|34989112|gb|CF563029.1|CF563029
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|15370546|gb|BI529972.1|BI529972
EST:     TGTGGCGAGATATTGAGGCGAATTGGGAGTGTGGTTGCAAAGCATCCGAG                         GGTCAATGTCACTAT
genomic: TGTGGCGAGATATTGAGGCGAATTGGGA-TGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTAT
EST: gi|34982181|gb|CF556098.1|CF556098
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAATGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|14231772|gb|BG850588.1|BG850588
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACT
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACT
EST: gi|34991314|gb|CF565231.1|CF565231
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGG
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGG
EST: gi|34988120|gb|CF562037.1|CF562037
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|34991313|gb|CF565230.1|CF565230
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|6546994|gb|AV392778.1|AV392778
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|34991423|gb|CF565340.1|CF565340
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|14235540|gb|BG854356.1|BG854356
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCA
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCA
EST: gi|34994263|gb|CF568180.1|CF568180
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAAGGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|34990774|gb|CF564691.1|CF564691
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|34990773|gb|CF564690.1|CF564690
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|34981616|gb|CF555533.1|CF555533
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
EST: gi|34982180|gb|CF556097.1|CF556097
EST:     TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAG                         GTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC
genomic: TTGTGGCGAGATATTGAGGCGAATTGGGATGTGGTTTCAAAGCATCCGAGgtttgcaatt ... tgccgcgtagGTTTAATGTCACTATCCTTGGGTCTGGGCGACTCAGTGACCTCAACATTAC