1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACGGTTTCATTCTGATCATCTGCGTTGTTGCAGCTTGCCTGCAAGCATGCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatagtcacgatttgggaggtttgcgctgtcgcatctaatcacaaacaccgacgtccag
species | Chlamydomonas reinhardtii |
transcript | EDO97185 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG GTCGTGAGTGEST: gi|49462343|gb|BP090256.1|BP090256
genomic: GTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: GCGATACGTTAAATGTTGCTTNGGTAAATATTCCTGGCTTTCACTTGGAG GTCGTGAGTGEST: gi|14225136|gb|BG843952.1|BG843952
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG GTCGTGAGTGEST: gi|10778785|gb|AV635465.1|AV635465
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG GTCGTGAGTGEST: gi|14238702|gb|BG857518.1|BG857518
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG GTCGTGAGTGEST: gi|22063509|gb|BQ815247.1|BQ815247
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG GTCGTGAGTG
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACGGTTTCATTCTGATCATCTGCGTTGTTGCAGCTTGCCTGCAAGCATGCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatagtcacgatttgggaggtttgcgctgtcgcatctaatcacaaacaccgacgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG