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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcagagcaccatcactgcaggcccccactccaaaacaatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCAAGTTTTAAAGCGTCGTGTCCATTGGGTATTGCCTATCCTTCCTTTAAAT

Basic information

species Chlamydomonas reinhardtii
transcript EDO97185
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14231773|gb|BG850589.1|BG850589
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|10793841|gb|AV631207.1|AV631207
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|22065734|gb|BQ816526.1|BQ816526
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTATAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|15370546|gb|BI529972.1|BI529972
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|10772097|gb|AV622920.1|AV622920
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|10769407|gb|AV620232.1|AV620232
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|14231772|gb|BG850588.1|BG850588
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|10774853|gb|AV625676.1|AV625676
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|6546994|gb|AV392778.1|AV392778
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|14238702|gb|BG857518.1|BG857518
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|14235540|gb|BG854356.1|BG854356
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
EST: gi|22063509|gb|BQ815247.1|BQ815247
EST:     TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAG                         GTCGGTGCATCTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA
genomic: TCAACTTTTGTCAAGGGCACGGCTGTATCAACCTTAGAAACGGCTAAAAGgtactgcaga ... aatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactgcagagcaccatcactgcaggcccccactccaaaacaatgttgcagGTCGGTGCATTTTGTGGCACTTGCACCTCACGCAGCTGTCCATGCATCTCAAGTTTTAAAGCGTCGTGTCCATTGGGTATTGCCTATCCTTCCTTTAAAT
                                               aaaacaat  TA-rich tract