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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTGAGTGgtgagatgaccttggcagctatagttgtcatgaaaatgcataaagcatgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97185
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14231773|gb|BG850589.1|BG850589
EST:     GGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|10793841|gb|AV631207.1|AV631207
EST:     GGCTTTCACTTGGAGGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGCTTTCACTTGGAGGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|10772097|gb|AV622920.1|AV622920
EST:     GAGGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GAGGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|49462343|gb|BP090256.1|BP090256
EST:     GGCTTTCACTTGGAGGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGCTTTCACTTGGAGGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|10769407|gb|AV620232.1|AV620232
EST:     GAGGTCGTGAGTG                         GTTACATTCATGTGNTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GAGGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|14231772|gb|BG850588.1|BG850588
EST:     GGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|14225136|gb|BG843952.1|BG843952
EST:     GGCTTTCACTTGGAGGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGCTTTCACTTGGAGGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|10778785|gb|AV635465.1|AV635465
EST:     GGCTTTCACTTGGAGGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGCTTTCACTTGGAGGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|14238702|gb|BG857518.1|BG857518
EST:     GGCTTTCACTTGGAGGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGCTTTCACTTGGAGGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|14235540|gb|BG854356.1|BG854356
EST:     GGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
EST: gi|22063509|gb|BQ815247.1|BQ815247
EST:     GGCTTTCACTTGGAGGTCGTGAGTG                         GTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC
genomic: GGCTTTCACTTGGAGGTCGTGAGTGgtgagatgac ... gcatgtgcagGTTACATTCATGTGTTGGCGCCTCTTTTTACACCCCTGACCGTTTACGTGC