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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggatagtcacgatttgggaggtttgcgctgtcgcatctaatcacaaacaccgacgtccagGTCGTGAGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDO97185
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10793841|gb|AV631207.1|AV631207
EST:     GTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG                         GTCGTGAGTG
genomic: GTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: gi|49462343|gb|BP090256.1|BP090256
EST:     GCGATACGTTAAATGTTGCTTNGGTAAATATTCCTGGCTTTCACTTGGAG                         GTCGTGAGTG
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: gi|14225136|gb|BG843952.1|BG843952
EST:     GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG                         GTCGTGAGTG
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: gi|10778785|gb|AV635465.1|AV635465
EST:     GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG                         GTCGTGAGTG
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: gi|14238702|gb|BG857518.1|BG857518
EST:     GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG                         GTCGTGAGTG
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG
EST: gi|22063509|gb|BQ815247.1|BQ815247
EST:     GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAG                         GTCGTGAGTG
genomic: GCGATACGTTAAATGTTGCTTTGGTAAATATTCCTGGCTTTCACTTGGAGgtgcggatag ... cgacgtccagGTCGTGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcacgatttgggaggtttgcgctgtcgcatctaatcacaaacaccgacgtccagGTCGTGAGTG
                             atctaat  putative branch site (score: 3)
                             atctaat  TA-rich tract