1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCTCACGATCAAGTCGGGCACGACGCTGACCGACCTCTCTATGGACAAGACGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcgatcggttcgtgtgaatatggatctctccttgcctcctacagcctggagcacatgcacgcgttggcccccctcttgtttagcacacgcgcatgcctagctctcacatgcatcgcccgctgacatcttccgcgctgttgtgcacgcag
species | Chlamydomonas reinhardtii |
transcript | EDO97068 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCG ATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAAEST: gi|49467887|gb|BP095748.1|BP095748
genomic: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcga ... gtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
EST: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCG ATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAAEST: gi|16431283|gb|BI996493.1|BI996493
genomic: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcga ... gtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
EST: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCG ATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAAEST: gi|14234161|gb|BG852977.1|BG852977
genomic: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcga ... gtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
EST: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCG ATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
genomic: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcga ... gtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCACGATCAAGTCGGGCACGACGCTGACCGACCTCTCTATGGACAAGACGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcgatcggttcgtgtgaatatggatctctccttgcctcctacagcctggagcacatgcacgcgttggcccccctcttgtttagcacacgcgcatgcctagctctcacatgcatcgcccgctgacatcttccgcgctgttgtgcacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC