1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtggaacggtaccctgccagcagacttgtgtgtggttaatgtgacatgtaggcaggccgaagggctagtcagactgacttcacatgctattcatacggtacatggactgacctcctgtcctgaactttcacctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATTGGAGCGTGTCTGACGTGGCCCGGCTGGAGCCCCAGATCTGCCTCACGAT
species | Chlamydomonas reinhardtii |
transcript | EDO97068 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCATTGCNCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGC AGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATTEST: gi|49463469|gb|BP091382.1|BP091382
genomic: GGCATTGC-CATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaa ... ctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
EST: CACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGC AGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATTEST: gi|16431283|gb|BI996493.1|BI996493
genomic: CACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaa ... ctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
EST: CACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGC AGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATTEST: gi|14234161|gb|BG852977.1|BG852977
genomic: CACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaa ... ctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
EST: GGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGC AGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
genomic: GGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaa ... ctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
ctattcatacggtacatggactgacctcctgtcctgaactttcacctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATTGGAGCGTGTCTGACGTGGCCCGGCTGGAGCCCCAGATCTGCCTCACGAT
gactgac putative branch site (score: 2)
ctttcacct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggaacggtaccctgccagcagacttgtgtgtggttaatgtgacatgtaggcaggccgaagggctagtcagactgacttcacatgctattcatacggtacatggactgacctcctgtcctgaactttcacctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATTGGAGCGTGTCTGACGTGGCCCGGCTGGAGCCCCAGATCTGCCTCACGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA