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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCCCTGCTCCCGGATACGACAACAGCCCGTGCACTCCGCAGCCGTCCGCGGTCCCCATGTGCGGACCTGCACCTCCCAGCTGGCCTGAGTACCCCTCgtaagttgggtcacgcacagggatggtgccgggtccttttatgtcggacacatatcttggtcgggtaagatccgaggaatctgcagacaggcgaaacacagtatctgctctgtgcaatcggtcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97068
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49466689|gb|BP094602.1|BP094602
EST:     GCGGTCCCCATGTGCGGACCTGCACCTCCCAGCTGGCCTGAGTACCCCTC                         GTGCCGTGGCAAGAGCGCAAACGACTACTTCCAGTTCCTGGTTGGCACCCG
genomic: GCGGTCCCCATGTGCGGACCTGCACCTCCCAGCTGGCCTGAGTACCCCTCgtaagttggg ... tcggtcgcagGTGCCGTGGCAAGAGCGCAAACGACTACTTCCAGTTCCTGGTTGGCACCCG
EST: gi|49463469|gb|BP091382.1|BP091382
EST:     GCGGTCCCCATGTGCGGACCTGCACCTCCCAGCTGGCCTGAGTACCCCTC                         GTGCCGTGGCAAGAGCGCAAACGACTACTTCCAGTTCCTGGTTGGCACCCG
genomic: GCGGTCCCCATGTGCGGACCTGCACCTCCCAGCTGGCCTGAGTACCCCTCgtaagttggg ... tcggtcgcagGTGCCGTGGCAAGAGCGCAAACGACTACTTCCAGTTCCTGGTTGGCACCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACCCCTGCTCCCGGATACGACAACAGCCCGTGCACTCCGCAGCCGTCCGCGGTCCCCATGTGCGGACCTGCACCTCCCAGCTGGCCTGAGTACCCCTCgtaagttgggtcacgcacagggatggtgccgggtccttttatgtcggacacatatcttggtcgggtaagatccgaggaatctgcagacaggcgaaacacagtatctgctctgtgcaatcggtcgcag

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