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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcgatcggttcgtgtgaatatggatctctccttgcctcctacagcctggagcacatgcacgcgttggcccccctcttgtttagcacacgcgcatgcctagctctcacatgcatcgcccgctgacatcttccgcgctgttgtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAAATGTTAGTTGATAGGTTTGCATTTCGTGTGACGCCATTCCTAATACTGT

Basic information

species Chlamydomonas reinhardtii
transcript EDO97068
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14234160|gb|BG852976.1|BG852976
EST:     CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCG                         ATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
genomic: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcga ... gtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
EST: gi|49467887|gb|BP095748.1|BP095748
EST:     CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCG                         ATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
genomic: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcga ... gtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
EST: gi|16431283|gb|BI996493.1|BI996493
EST:     CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCG                         ATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
genomic: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcga ... gtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
EST: gi|14234161|gb|BG852977.1|BG852977
EST:     CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCG                         ATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA
genomic: CGAAGACGCTGTGGGCTGCGACCTTCAGCGCGGATCACTACTGCTGCCCGgtaagttcga ... gtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctagctctcacatgcatcgcccgctgacatcttccgcgctgttgtgcacgcagATCCAAGCGGGCTCGCCGTTCACCACTGACGGAGTGCCGGTTGAGCTGTAAATGTTAGTTGATAGGTTTGCATTTCGTGTGACGCCATTCCTAATACTGT
                       cgctgac  putative branch site (score: 3)