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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTGAACAAGGTTCAGTTCTACCTGGACTACAGCCGGCGCTACCAGATCACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaacggtaccctgccagcagacttgtgtgtggttaatgtgacatgtaggcaggccgaagggctagtcagactgacttcacatgctattcatacggtacatggactgacctcctgtcctgaactttcacctgcgtgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97068
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14234160|gb|BG852976.1|BG852976
EST:     GGCATTGCNCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGC                         AGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
genomic: GGCATTGC-CATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaa ... ctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
EST: gi|49463469|gb|BP091382.1|BP091382
EST:     CACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGC                         AGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
genomic: CACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaa ... ctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
EST: gi|16431283|gb|BI996493.1|BI996493
EST:     CACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGC                         AGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
genomic: CACCGGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaa ... ctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
EST: gi|14234161|gb|BG852977.1|BG852977
EST:     GGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGC                         AGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT
genomic: GGCATTGCCATCAAGTACAACAACGGGTCTACCTTCACCCGTTCGCgtaagtggaa ... ctgcgtgcagAGTCGTGGGGCCCCGTGGGCAGCAACTCCCTCAAGATCACCAGTTTGGATT