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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgcggggctggcaccatgggggacacaaggacagaagcggacgcgcacgcgggcagggttgttgtcggtgcacctggtgtgtgcagcccatcgctgggcactacccttgttgctgccaagttcacgtctgctgtcgtcacaccgtcataccgaacaccattacttcgctgctccaacagGCCGCCTGCACGGCGTGGTGTCGCCAGAGACGGTGGATGAGGTCGCGCGGCGTGTGGCGACGCTGGGCACGGAACCGGAGTCGGCGGGGCCAGCAGGGGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO96961
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161798068|gb|FC087791.1|FC087791
EST:     GCAGCCCAACGTCACCTTCGGGCAGCCGCCCAACACTAAGGACGCCGCTG                         GCCGCCTGCACGGCGTGGTGTCCCCAGAGACGGTGGATGAGGTCGCGCGGC
genomic: GCAGCCCAACGTCACCTTCGGGCAGCCGCCCAACACCAAGGACGCCGCTGgtgggtgcgg ... gctccaacagGCCGCCTGCACGGCGTGGTGTCGCCAGAGACGGTGGATGAGGTCGCGCGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtctgctgtcgtcacaccgtcataccgaacaccattacttcgctgctccaacagGCCGCCTGCACGGCGTGGTGTCGCCAGAGACGGTGGATGAGGTCGCGCGGCGTGTGGCGACGCTGGGCACGGAACCGGAGTCGGCGGGGCCAGCAGGGGC
                                           ctgctcc  CT-rich tract
                                  attactt  TA-rich tract