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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagacgctgggcctattttcctgccagggatctccgtcttgagctattggaagcatcgcgcagatcactgaccatgctggttggtggtgtgcaattttccccttccccaacttggtccaacagTGGAAGTTCGCGGGGGCTCGCGGAACGTCAAG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96961
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161798068|gb|FC087791.1|FC087791
EST:     CCAGTTTACTTGGGATACAAACGCGGGAGCTTTCGAGGCGTTCGTCAAAG                         TGGAAGTTCGCGGGGGCTCGCGGAACGTCAAG
genomic: CCAGTTTACTTGGGATACAAACGCGGGAGCTTTTGAGGCGTTCGTCAAAGgcaagacgct ... ggtccaacagTGGAAGTTCGCGGGGGCTCGCGGAACGTCAAG
EST: gi|9440978|gb|BE441475.1|BE441475
EST:     CCAGTTTACTTGGGATACAAACGCGGGAGCTTTCGAGGCGTTCGTCAAAG                         TGGAAGTTCGCGGGGGCTCGCGGAACGTCAAG
genomic: CCAGTTTACTTGGGATACAAACGCGGGAGCTTTTGAGGCGTTCGTCAAAGgcaagacgct ... ggtccaacagTGGAAGTTCGCGGGGGCTCGCGGAACGTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaccatgctggttggtggtgtgcaattttccccttccccaacttggtccaacagTGGAAGTTCGCGGGGGCTCGCGGAACGTCAAG
 cactgac  putative branch site (score: 2)
                        aatttt  TA-rich tract