1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accaaggggagcactggcgctgcatcccaggaatgctgggacggctccggcagctgcacctatggtactgacgaaacttctggtgctcgttgccttgcagAGGCCAACCTGCAGCCCAACGTCACCTTCGGGCAGCCGCCCAACACCAAGGACGCCGCTG
species | Chlamydomonas reinhardtii |
transcript | EDO96961 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGCATGAACTTTGCTCGCGACCTGGCGGGCCTGGACGCGCCGCGCCAGG ATGCCAACCTGCAGCCCAACGTCACCTTCGGGCAGCCGCCCAACACTAAGGEST: gi|9440978|gb|BE441475.1|BE441475
genomic: CCGCATGAACTTCGCTCGCGACCTGGCGGGCCTGGACGCGCCGCGCCAGGgtgaggcggg ... tgccttgcagAGGCCAACCTGCAGCCCAACGTCACCTTCGGGCAGCCGCCCAACACCAAGG
EST: CCGCATGAACTTTGCTCGCGACCTGGCGGGCCTGGACGCGCCGCGCCAGG ATGCCAACCTGCAGCCCAACGTCACCTTCGGGCAG
genomic: CCGCATGAACTTCGCTCGCGACCTGGCGGGCCTGGACGCGCCGCGCCAGGgtgaggcggg ... tgccttgcagAGGCCAACCTGCAGCCCAACGTCACCTTCGGGCAG
tccggcagctgcacctatggtactgacgaaacttctggtgctcgttgccttgcagAGGCCAACCTGCAGCCCAACGTCACCTTCGGGCAGCCGCCCAACACCAAGGACGCCGCTG
tactgac putative branch site (score: 1)
ttgcctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaaggggagcactggcgctgcatcccaggaatgctgggacggctccggcagctgcacctatggtactgacgaaacttctggtgctcgttgccttgcagAGGCCAACCTGCAGCCCAACGTCACCTTCGGGCAGCCGCCCAACACCAAGGACGCCGCTG
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