1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatggggcaagttacggactagtgccgttgtgtttgtaaacgaggctcggggccggcgtgtgacgacgacgccgtgccggcgcgtgtgtgcgttctgcagGGAGCTGCTGGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAAGTTCCAGGGCAACAAGAAGGGGACTTCGGTCGTGGCTGCCTGCG
species | Chlamydomonas reinhardtii |
transcript | EDO96961 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCAT GGAGCTGCTAGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAAEST: gi|9440978|gb|BE441475.1|BE441475
genomic: AAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCATgtgagtgcac ... cgttctgcagGGAGCTGCTGGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAA
EST: AAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCAT GGAGCTGCTAGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAA
genomic: AAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCATgtgagtgcac ... cgttctgcagGGAGCTGCTGGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggggcaagttacggactagtgccgttgtgtttgtaaacgaggctcggggccggcgtgtgacgacgacgccgtgccggcgcgtgtgtgcgttctgcagGGAGCTGCTGGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAAGTTCCAGGGCAACAAGAAGGGGACTTCGGTCGTGGCTGCCTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - -acggact
- - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgtgt