1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTCAAACGCGGAAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCATgtgagtgcacacgagtgattacctgaagcggctagttggggctcttgggcttctgggaccgtgtaggaccaagtttcgaaccatcaatgaagactcgggt...
species | Chlamydomonas reinhardtii |
transcript | EDO96961 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCAT GGAGCTGCTAGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAAEST: gi|9440978|gb|BE441475.1|BE441475
genomic: AAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCATgtgagtgcac ... cgttctgcagGGAGCTGCTGGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAA
EST: AAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCAT GGAGCTGCTAGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAA
genomic: AAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCATgtgagtgcac ... cgttctgcagGGAGCTGCTGGAGGGGTCGAGCGAGCTGCGGCTGATGCTCTGTCGCGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCAAACGCGGAAGGCCCCGCTGATTGGCGACACTATTACATGGCGCGAGGAGCTACGCATgtgagtgcacacgagtgattacctgaagcggctagttggggctcttgggcttctgggaccgtgtaggaccaagtttcgaaccatcaatgaagactcgggt
- - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accatca