1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagagatgaggacagctcgcaatggtggtgctcacatgggcaccctgttggcgtacacagcacgtgcctcctgaatgtttactgccgcctgccgccgcagGTGGGCCGCGCCGTGACGAAGCCCGATTTCGTGAAGCTGCTGAAGAAGCTGCTCAACGTGACGCTGCCGCCGCACGTGGTGGACATCATCTTCGCCGTGT
species | Chlamydomonas reinhardtii |
transcript | EDO96958 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCGCAAGCTGCACACGCTGCAAGTGGCGCTGGACTTCTTCGCGCAG GTGGGCCGCGCCGTGACGAAGCCCGATTTCGTGAAGCTGCTGAAGAAGCTGEST: gi|161821531|gb|FC109826.1|FC109826
genomic: TGGAGCGCAAGCTGCACACGCTGCAGGTGGCGCTGGACTTCTTCGCGCAGgtaggtggta ... gccgccgcagGTGGGCCGCGCCGTGACGAAGCCCGATTTCGTGAAGCTGCTGAAGAAGCTG
EST: TGGAGCGCAAGCTGCACACGCTGCAGGTGGCACTGGACTTCTTCGCGCAG GTGGGCCGCGCCGTGACGAAGCCCGATTTCGTGAAGCTGCTGAAGAAGCTGEST: gi|14234975|gb|BG853791.1|BG853791
genomic: TGGAGCGCAAGCTGCACACGCTGCAGGTGGCGCTGGACTTCTTCGCGCAGgtaggtggta ... gccgccgcagGTGGGCCGCGCCGTGACGAAGCCCGATTTCGTGAAGCTGCTGAAGAAGCTG
EST: GAGCGCAAGCTGCACACGCTGCAGGTGGGCGCTTGGACTTCTTCGCGCAG GTGGCCCGCGCCGTG
genomic: -AGCGCAAGCTGCACACGCTGCAGGTGG-CGCT-GGACTTCTTCGCGCAGgtaggtggta ... gccgccgcagGTGGGCCGCGCCGTG
tgttggcgtacacagcacgtgcctcctgaatgtttactgccgcctgccgccgcagGTGGGCCGCGCCGTGACGAAGCCCGATTTCGTGAAGCTGCTGAAGAAGCTGCTCAACGTGACGCTGCCGCCGCACGTGGTGGACATCATCTTCGCCGTGT
aatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagatgaggacagctcgcaatggtggtgctcacatgggcaccctgttggcgtacacagcacgtgcctcctgaatgtttactgccgcctgccgccgcagGTGGGCCGCGCCGTGACGAAGCCCGATTTCGTGAAGCTGCTGAAGAAGCTGCTCAACGTGACGCTGCCGCCGCACGTGGTGGACATCATCTTCGCCGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - -ctcgcaa
- - - - - - - - - - - - - - -gctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - gtacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttta