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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAACACAAGTTCCTGGCGGACGTCGACTTGTTGCGTGCCATCGTGCCAACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACGgtgaggccacactcagtgcttgagtttctagggacatacaattgtcggctgggtagcaatagcagcacggcgcctctagatttgggcggtagctgatgaacacgtgataacaacggttccccgcacacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96958
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15698785|gb|BI723090.1|BI723090
EST:     AACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACG                         GTGAGCGCCAA-GCGCGCG
genomic: AACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACGgtgaggccac ... gcacacgcagGTGAGCGCCAAAGCGCGCG
EST: gi|161821531|gb|FC109826.1|FC109826
EST:     AACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACG                         GTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCTGGAGCAAGGCGCAGACCG
genomic: AACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACGgtgaggccac ... gcacacgcagGTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCTGGAGCAAGGCGCAGACCG
EST: gi|14234975|gb|BG853791.1|BG853791
EST:     CCGCTCCGGGTCTCTCGACG                         GTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCTGGAGCAAGGCGCAGACCG
genomic: CCGCTCCGGGTCTCTCGACGgtgaggccac ... gcacacgcagGTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCTGGAGCAAGGCGCAGACCG
EST: gi|15368339|gb|BI527765.1|BI527765
EST:     CCGCTCCGGGTCTCTCGACG                         GTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCTGGAGCAAGGCGCAGACCG
genomic: CCGCTCCGGGTCTCTCGACGgtgaggccac ... gcacacgcagGTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCTGGAGCAAGGCGCAGACCG
EST: gi|22051865|gb|BQ809926.1|BQ809926
EST:     AACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACG                         GTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCT
genomic: AACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACGgtgaggccac ... gcacacgcagGTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCT
EST: gi|10127779|gb|BE726483.1|BE726483
EST:     AACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACG                         GTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCTGGAGCAAGGCGCAGACCG
genomic: AACCTACCCGCCCAGCGAGTCGCACCTTGACCGCTCCGGGTCTCTCGACGgtgaggccac ... gcacacgcagGTGAGCGCCAAAGCGCGCGCCCACAGCCGTTCTGGAGCAAGGCGCAGACCG