1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTCATCTCCTATCCCGAATTCCTGCTGGTGCTGACGCTGCTGTCCATCCACGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACGgtaaggcgcgggcagtcatgagcaagaaggcgggcaggcacgtcctgcgtcagaacgtttggacgttgcccttcaccttgtgttgggcactgcgcctcttggtcctgggagctcaattctggacatcgctaccagcaaaacacatcccggtgtgatgcctgttgcacgccccacag
species | Chlamydomonas reinhardtii |
transcript | EDO96958 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACG GCCAGATTGACGCTGAGGAGTTCAAGGCCGTCATGGAGCTGCTACAGGCCAEST: gi|14234975|gb|BG853791.1|BG853791
genomic: CGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACGgtaaggcgcg ... cgccccacagGCCAGATTGACGCTGAGGAGTTCAAGGCCGTCATGGAGCTGCTACAGGCCA
EST: CGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACG GCCAGATTGACGCTGAGGAGTTCAAGGCCGTCATGGAGCTGCTACAGGCCAEST: gi|15368339|gb|BI527765.1|BI527765
genomic: CGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACGgtaaggcgcg ... cgccccacagGCCAGATTGACGCTGAGGAGTTCAAGGCCGTCATGGAGCTGCTACAGGCCA
EST: CGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACG GCCAGATTGACGCTGAGGAGTTCAAGGCCGTCATGGAGCTGCTACAGGCCAEST: gi|10127779|gb|BE726483.1|BE726483
genomic: CGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACGgtaaggcgcg ... cgccccacagGCCAGATTGACGCTGAGGAGTTCAAGGCCGTCATGGAGCTGCTACAGGCCA
EST: CGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACG GCCAGATTGACGCTGAGGAGTTCAAGGCCGACATGGAGCTGCTACAGGCCA
genomic: CGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACGgtaaggcgcg ... cgccccacagGCCAGATTGACGCTGAGGAGTTCAAGGCCGTCATGGAGCTGCTACAGGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCATCTCCTATCCCGAATTCCTGCTGGTGCTGACGCTGCTGTCCATCCACGAGCGGGATGTGAAGACCATTTTCGACGTGGTGGACCTGGACGGAAACGgtaaggcgcgggcagtcatgagcaagaaggcgggcaggcacgtcctgcgtcagaacgtttggacgttgcccttcaccttgtgttgggcactgcgcctcttggtcctgggagctcaattctggacatcgctaccagcaaaacacatcccggtgtgatgcctgttgcacgccccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA