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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGACCAGGAGGGCTTCCACCTGCTGCCGCTTGCTTCGCGCCAGCGCATCTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacgcaaacgggttctccacatgctcgttgcgtccttcgctcccttctctttctcaaatggcggccccttggcccgctgtcaccacatgcgccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO96958
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16435119|gb|BM000339.1|BM000339
EST:     CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAG                         TCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
genomic: CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
EST: gi|15702410|gb|BI726715.1|BI726715
EST:     CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATTAAG                         TCTTCGAGTATTTCA
genomic: CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCA
EST: gi|15698785|gb|BI723090.1|BI723090
EST:     CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAG                         TCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
genomic: CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
EST: gi|161821531|gb|FC109826.1|FC109826
EST:     CATGAGCACGCTCGATAAAG                         TCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTCGCGG
genomic: CATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
EST: gi|15702448|gb|BI726753.1|BI726753
EST:     CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAG                         TCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCT
genomic: CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCT
EST: gi|8932936|gb|BE227697.1|BE227697
EST:     CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATANAG                         TCTTCGAGTATTTCAGCTCGCAAGAAA-GGATAAACACAAGTTCCTG
genomic: CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTG
EST: gi|49459517|gb|BP087430.1|BP087430
EST:     CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAG                         TCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
genomic: CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
EST: gi|10791186|gb|AV628552.1|AV628552
EST:     CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAG                         TCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
genomic: CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
EST: gi|22051865|gb|BQ809926.1|BQ809926
EST:     CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAG                         TCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG
genomic: CTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacg ... tgcgccacagTCTTCGAGTATTTCAGCTCGCAAGAAAAGGATAAACACAAGTTCCTGGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGACCAGGAGGGCTTCCACCTGCTGCCGCTTGCTTCGCGCCAGCGCATCTTCTTTAAATATGAGAAGCGCATTCGAGACATGAGCACGCTCGATAAAGgtgcgtgacgcaaacgggttctccacatgctcgttgcgtccttcgctcccttctctttctcaaatggcggccccttggcccgctgtcaccacatgcgccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC