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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgaggcggtatctgggaatggaagcgcgcatgcgaacctgcactagcgccagcaccgcgatgatgatggagttgtttcgggcgtgctcgacggcttgcagGTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAGTTCCTCAAGGTGCACCAGGTGGAGCGCAAGCTGCACACGCTGCAGGTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO96958
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22055574|gb|BQ811909.1|BQ811909
EST:     GCCTGGTGGCCACCGCGGACGTGCGCCAGGTGGACAAGCTGCTGGACAGG                         GTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAG
genomic: GCCTGGTGGCCACCGCGGACGTGCGCCAGGTGGACAAGCTGCTGGACAGGgtgagtgaga ... cggcttgcagGTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAG
EST: gi|161821531|gb|FC109826.1|FC109826
EST:     GCCTGGTGGCCACCGCGGACGTGCGCCAGGTGGACAAGCTGCTGGACAGG                         GTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAG
genomic: GCCTGGTGGCCACCGCGGACGTGCGCCAGGTGGACAAGCTGCTGGACAGGgtgagtgaga ... cggcttgcagGTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAG
EST: gi|14234975|gb|BG853791.1|BG853791
EST:     GCCTGGTGGCCACCGCGGACGTGCGCCAGGTGGACAAGCTGCTGGACAGG                         GTTGACGCGCTGGAGCGGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAG
genomic: GCCTGGTGGCCACCGCGGACGTGCGCCAGGTGGACAAGCTGCTGGACAGGgtgagtgaga ... cggcttgcagGTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAG
EST: gi|15368339|gb|BI527765.1|BI527765
EST:     GCCTGGTGGC-ACCGCGGACGTGCGCCAGGTGGACAAGCTGCTGGACAGG                         GTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAG
genomic: GCCTGGTGGCCACCGCGGACGTGCGCCAGGTGGACAAGCTGCTGGACAGGgtgagtgaga ... cggcttgcagGTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgaggcggtatctgggaatggaagcgcgcatgcgaacctgcactagcgccagcaccgcgatgatgatggagttgtttcgggcgtgctcgacggcttgcagGTTGACGCGCTGGAGCCGGAGCTGCTGCGCAAGCGCATCAGCTTTGACGAGTTCCTCAAGGTGCACCAGGTGGAGCGCAAGCTGCACACGCTGCAGGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -gtatctg
- - - - - - - - - - - - - cgcatgc
- - - - - - - - - - - - - - - - - -acctgca
- - - - - - - - - - - - - - - - - - - - - - - - ccagcac