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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTGTTGCTTTGTTCATGGATTTGAGCCATACTTTTACATTGCTTGCCCTCCTGGAATGGGGCCAGACGATATTTCTAATTTCCATCAGAGTCTTGAGgtatttactatgtagatctctgtatattttgtactttgatctcgctggttttgttttaaagctcagctgattcattcag

Basic information

species Arabidopsis thaliana
transcript AT5G63960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G16110.2 (Glycine max), 5'ss of exon 3
TGTGTGTTGCTTTGTTCATGGATTTGAGCCATACTTTTACATTGCTTGCCCTCCTGGAATGGGGCCAGACGATATTTCTAATTTCCATCAGAGTCTTGAGgtatttactatgtagatctctgtatattttgtactttgatctcgctggttttgttttaaagctcagctg-attcattcag---------------------------------------------------
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TGTTTGTTGCAATGTTCATGGGTTTGAACCATATTTCTACATTTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCCCATTTTCATCAAACTCTTGAGgtatctagttta-gtatctgaaaatactttcctttttccagtttttagtttagaaaagggaacaggcttcatttttttataacttatgaactgctttaatttagtatcttttgtgtcctgtgatgcttcag

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 3
TGTGTGTTGCTTTGTTCATGGATTTGAGCCATACTTTTACATTGCTTGCCCTCCTGGAATGGGGCCAGACGATATTTCTAATTTCCATCAGAGTCTTGAGgtatttact-------atgtagatctctgtatattttgtactttgatctcg---------------ctggttttgttttaaagctca---gctgattca-ttcag---------------------------
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TGTTTGTTGCAATGTTCATGGGTTTGAACCATATTTCTACATCTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCCCATTTTCATCAAACTCTCGAGgtatctagtttagaacctgaaaatacttttctttttccagttttaatctagaaaagggaacaagcttcattttttttttgtaacttacgaactgctttaatttagttgcttttgtgtcctgtgatggttcag