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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACTGCACCTTGgtaattcttttgatattttcttttcaatttctatttattttatcatctattgtttatacaccttattaatttgggagcattatttccatgttcttgtctttgaag

Basic information

species Arabidopsis thaliana
transcript AT5G63960.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 15
AGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACTGCACCTTGgtaa---ttcttttgatattttct--tttcaatttctatttattttatcatctattgtttatacaccttattaatttgggagcattatttccatgttcttgtctttgaag
 |||||  | || || ||||| || || ||||| |||||||| ||||||||  |||| || || || |||||||||||||| || |||||||| || |||||||   ||  |||  || |||||  ||  |||  ||| |   |  | ||   |   ||  |      ||||| |  |    ||  |    ||||||    | |||||||
GGCAAGGGCTGGATTTTATGAGAAACCCATTGCGACTTTGGACTTTGCTTCGTTGTATCCATCCATCATGATGGCATATAACCTATGCTACTGTACTTTGgtaaaaattagtttcttaatttctgattataatacctactacatacagcagaaacatttgttctctgatattattgggtattcacaaagctcatgtttac-tgtttgaag

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 15
AGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACTGCACCTTGgtaattcttttgatattttcttttcaatttctatttattttatcatctattgtttatacaccttattaatttgggagcatta-tttccatgttcttgtctttgaag--------------------------------------------------------
 |||||  | || || |||||||| |||||||| ||||| |||||||| ||  |||| || || ||||||||||| |||||| | || || |||||  |||||| | |||     |||| |||| | ||| |  |||   |      | |||||  | |     |  || ||  ||| | || |||     |   | |  || ||                                                         
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGgtaaatatttct---ttttttttttagtttttccttaagcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaag

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 15
AGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACTGCACCTTGgtaattcttttgatattttcttttcaatttctatttattttatcatctattgtttatacaccttattaatttgggagcattatttccatgttcttgtctttgaag---------------------------------------------------------
 |||||  | || || |||||||| |||||||| ||||| |||||||| ||  |||| || || ||||||||||| |||||  | || || |||||  |||||| | |||  || |||| | ||   |||   || |  |||   | | || ||| |  |   ||  || ||  ||| | || ||   |  ||   |   |  |                                                          
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAACTTATGTTATTGCACTCTGgtaaatatttc-attttttttattagtttttccttgagcttaagttttgttttttcttta---taaaaaattatgagtactactttattcatcagattagttcaattcgtatggagtaacaactggtagataattttgtttttgtttttactgtttgttaag

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: PP1S54_271V6.1 (Physcomitrella patens), 5'ss of exon 15
AGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACTGCACCTTGgtaat-tcttttgatattttcttttcaatttctatttattttatcatctattgtttatacaccttattaatttgggagcattatttccatgttcttgtctttgaag------
 || | | |||| | |||||| ||||||||||| |||||||||||||| ||| ||||||| || || |||||||| || ||||| || |||||||| |||||||  ||||   ||  |  |||     |||  | |   ||| | | |||| |   |     | || |  |   |   |   || || || |  || |||   ||       
TGCTAAAGCAGGGTACTATGACAAGCCAATTGCCACTTTGGATTTTGCATCATTGTACCCCTCCATCATGATGGCGTACAATCTTTGTTACTGCACTTTGgtaacctcttacaatcgtggcttgatgctttgaagtgcatttgt-acctat-gccgacgtttcataattctccagatacgc-atatcgatctgattttctgaaaacattcag

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: EFJ15982 (Selaginella moellendorffii), 5'ss of exon 14
AGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACTGCACCTTGgtaattcttttgatattttcttttcaatt-tctatttattt-tatcatctattgtttatacaccttattaatttgggagcattatttccatgttcttgtctttgaag
||||||  | || || || |||||||||||||| ||  | |||||||| ||||||||||| |||||||||||||| || ||||| ||||| |||||||||||| |    |  ||||| | | ||  ||| |  | ||| || | | ||  |                                                        
AGCAAGGGCTGGATTTTACGAAAAGCCAATTGCCACGCTTGATTTTGCATCACTGTACCCATCAATTATGATGGCTTACAATCTTTGCTATTGCACCTTGgtactgtactccatattgtgtatttgattgtggaattacttgttttattcag-------------------------------------------------------