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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGATAGAGATGTTCCAGGGGCAGCTGAAAATGTCAAGAAAACCATTTCGGATCTTCTCATGAACCGTATTGACTTGTCACTTTTGGTGATTACTAAGgtaatatgttttacttgatttattgtcctgtgatgtttgtatcgcctgaaagtgtattttaatgattaaagccatctgttaaaactaaaacaagaatcaaatggataatgctcctgatgtgtttcctcaaatcatag

Basic information

species Arabidopsis thaliana
transcript AT5G63960.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 23
TATTGATAGAGATGTTCCAGGGGCAGCTGAAAATGTCAAGAAAACCATTTCGGATCTTCTCATGAACCGTATTGACTTGTCACTTTTGGTGATTACTAAGgtaatatgttttacttgatttattgtcctgtgatgtttgtatcgcctgaaagtgtattttaatgattaaagccatctgttaaaactaaaacaagaatcaaatggataatgctcctgatgtgtttcctcaaatcatag
  | || ||||||||||| || |||| | || |||||||||| |||||||| ||||| || ||||||||| | ||||| || ||| | || || || ||||| |        |||   || ||     ||     | ||| | | |||      | || |||   || || |  | ||||  |                                                      
AGTGGACAGAGATGTTCCTGGTGCAGTTCAATATGTCAAGAACACCATTTCTGATCTACTAATGAACCGTGTAGACTTATCTCTTCTAGTTATAACAAAGgtgaatccgcacact-acttaatacgattgaatcctctgtgttgtctg------tgttgtaaatctttaa-ctgtttgttgtacag---------------------------------------------------

upper sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 23
TATTGATAGAGATGTTCCAGGGGCAGCTGAAAATGTCAAGAAAACCATTTCGGATCTTCTCATGAACCGTATTGACTTGTCACTTTTGGTGATTACTAAGgtaatatgttttacttgatttattgtcc-tgtgatgtttgtatcgcctgaaagtgtattttaatgattaaagccatctgttaaaa-----ctaaaacaagaatcaaatggataatgctcctgatgtgtttcctcaaatcatag
 ||||| || ||  |||| |||||||   |  ||||||||||  | ||||| |||||||||||||| ||||| ||||| |||||| |||| ||||| |||||   | || | | |  || ||  | ||   | |||    |     ||    |  | || |   || |  ||  || || |  ||     |||  | || |||    | ||   ||   || |  || || ||  | |     
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGgtgggaagtct-attgaatctacagaccacctaatggcctttatagctatttgctttttgtggagaattcagatatttgatgcaagtgcactaccaaaataattcctttgaacttggcactaacatgcttgctttagtag---

upper sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 7
TATTGATAGAGATGTTCCAGGGGCAGCTGAAAATGTCAAGAAAACCATTTCGGATCTTCTCATGAACCGTATTGACTTGTCACTTTTGGTGATTACTAAGgtaatatgttttacttgatttattgtcc-tgtgatg--tttgtatcgcctgaaagtgtattttaatgattaaagccatctgttaaaactaaaacaagaatcaaatggataatgctcctgatgtgtttcctcaaatcatag
 ||||| || ||  |||| |||||||   |  ||||||||||  | ||||| |||||||||||||| ||||| ||||| |||||| | || ||||| |||||   |  || || |  || ||  | ||   | |||   || ||| ||       | | | |  |  ||| |     |   |    ||||  | || |||    | ||   ||   || |  || || ||  | |     
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGgtggga-attctattgaatctacagaccacctaatgggcttttatagctatttgctttttgtggaaaattcagatatttgatgtgcactaccaaaacaattcctttgagcttggcactaacatgcttgctttagtag---