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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacttctttactgccagcttctttaacttggtcattcagaaaaatgattacaatcctcggaaaatttcgaacaatatcctccctgtaaattgctcttttacatttgttttctattttttctcagATCAGTGCAAATTCTGTCTACGGGTTTACGGGAGCCACTGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATG

Basic information

species Arabidopsis thaliana
transcript AT5G63960.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63960.1 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: GLYMA06G16110.1 (Glycine max), 3'ss of exon 18
-----------gtga-acttctttactgccagcttctttaacttggtcattcagaaaaatgatta---caatcctcggaaaatttcgaacaatatcctccctgtaaattgct-cttttacatttgttttctattttttctcagATCAGTGCAAATTCTGTCTACGGGTTTACGGGAGCCACTGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATG
            ||  | |  ||||   |    ||| ||  | |     ||  || |  || | |   |  ||| | | ||| | || ||      || |   |   | |   | ||| |  ||  | | |  ||||  |||||| |||||||||||||| || |||||||| || |||||  |||| ||||||||||| ||||| ||||| ||||||||||| |||||||
gtaagctgtgcatgctattgttttatgtcttttttccttgtcctttctcttttgatagttgttcagttctctccactgcaaagtgcgtactgataactgctaattcttggtaacattttcgattcctattttcttttggtcagATTAGTGCAAATTCTGTTTATGGGTTTACAGGGGCCACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATG

upper sequence: AT5G63960.1 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: GLYMA04G38800.2 (Glycine max), 3'ss of exon 2
-----------gtga-acttctttactgccagcttctttaacttggtca-ttcagaaaaatgattacaatcctcggaaaatttcgaacaatatcctccctgtaaattgctcttttacatttgttttctattttttctcagATCAGTGCAAATTCTGTCTACGGGTTTACGGGAGCCACTGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATG
            ||  | |  ||||   |    ||| ||| | |  ||  ||  || |  || |       |||       | | || ||  | ||   | |   |  |  |||  ||||  | || |  ||||  |||||| ||||| |||||||| || |||||||| || || ||  |||| ||||||||||| ||||| ||||| ||||||||||| |||||||
gtaagctgtgcatgttattgttttatgtcttttttccttatccttttctcttttgatagttgttcggttctctctactgcatactaataac-tgctaattcttggtaacattttc-cattcctatttt-cttttggtcagATTAGTGCCAATTCTGTGTATGGGTTTACAGGGGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatatcctccctgtaaattgctcttttacatttgttttctattttttctcagATCAGTGCAAATTCTGTCTACGGGTTTACGGGAGCCACTGTTGGGCAGTTACCATGCTTAGAAATATCCTCGAGTGTAACTAGCTATG
                       ctcttttacatttgtt  CT-rich tract
                          ttttacatttgttttc  TA-rich tract