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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCATTCGTTCTGCAAAACCTTGACTGCATCCGACACAAGTACACATGGTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTGgttggtgtttcatttgcgcttctaactatctattcattggcttatttttcctgaattttgttctaagattgccttcaattcattttttgtttcttccctcag

Basic information

species Arabidopsis thaliana
transcript AT5G62000.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380590|gb|EG423182.1|EG423182
EST:     GTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTG                         GATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCAT
genomic: GTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTGgttggtgttt ... cttccctcagGATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCAT
EST: gi|116434213|gb|EG476805.1|EG476805
EST:     GTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTG                         GATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCAT
genomic: GTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTGgttggtgttt ... cttccctcagGATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCAT
EST: gi|116434209|gb|EG476801.1|EG476801
EST:     GTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTG                         GATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCAT
genomic: GTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTGgttggtgttt ... cttccctcagGATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCAT
EST: gi|116407719|gb|EG450311.1|EG450311
EST:     GTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTG                         GATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCAT
genomic: GTGGATTTTCTGTTCTTAGGCGACATGCGGATGAATGTCTCCCACCTCTGgttggtgttt ... cttccctcagGATATGTCTCGACAGCCTCCCACTCAAGAGTTAGTTGCAAAGGATTTGCAT