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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctccgtttcttagggtttcttaagcttggttttggttacagactgacttgatctaatttatcttcttcttcttcgtcttcatagTGGACCCTGAGGCTGCTCTTTACAGAGAGCTATGGCACGCTTGTGCTGGTCCGCTTGTGACGGTTCCTAGACAAGACGACCGAGTCTTCTATTTTCCTCA

Basic information

species Arabidopsis thaliana
transcript AT5G62000.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380590|gb|EG423182.1|EG423182
EST:     CGAGGGGCAAAAAAGTAATTCTACCCGATCCGCTGCGGCTGAGCGTGCTT                         TGGACCCTGAGGCTGCTCTTTACAGAGAGCTATGGCACGCTTGTGCTGGTC
genomic: CGAGGGGCAAAAAAGTAATTCTACCCGATCCGCTGCGGCTGAGCGTGCTTgtaagtctcc ... gtcttcatagTGGACCCTGAGGCTGCTCTTTACAGAGAGCTATGGCACGCTTGTGCTGGTC
EST: gi|164012452|gb|ES200473.1|ES200473
EST:     CGAGGGGCAAAAAAGTAATTCTACCCGATCCGCTGCGGCTGAGCGTGCTT                         TGGACCCTGAGGCTGCTCTTTACAGAGAGCTA
genomic: CGAGGGGCAAAAAAGTAATTCTACCCGATCCGCTGCGGCTGAGCGTGCTTgtaagtctcc ... gtcttcatagTGGACCCTGAGGCTGCTCTTTACAGAGAGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggttacagactgacttgatctaatttatcttcttcttcttcgtcttcatagTGGACCCTGAGGCTGCTCTTTACAGAGAGCTATGGCACGCTTGTGCTGGTCCGCTTGTGACGGTTCCTAGACAAGACGACCGAGTCTTCTATTTTCCTCA
                      tctaatttatcttctt  CT-rich tract
                  ttgatctaatttat  TA-rich tract