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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatatttcatctatgagttcttgctatttttggctaaatctttgagttaacccctctgtgattcgtacctgttgagatattttctaatgaactttgtcggtttccattgttttatgattagGTGGAGGCTTCGACGAACCAGGCGGCAGAACAACAGATGCCTCTCTATGATCTTCCGTCAAAGCTTCTCTGTCGAGTTATTAATGTAGATTTAAAG

Basic information

species Arabidopsis thaliana
transcript AT5G62000.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124877456|gb|EH956893.1|EH956893
EST:     CGACCGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAG                         GTGGAGGCTTCGACGA
genomic: CGACCGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAGgtgagatatt ... ttatgattagGTGGAGGCTTCGACGA
EST: gi|116380590|gb|EG423182.1|EG423182
EST:     CTAGACAAGACGACCGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAG                         GTGGAGGCTTCGACGAACCAGGCGGCAGAACAACAGATGCCTCTCTATGAT
genomic: CTAGACAAGACGACCGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAGgtgagatatt ... ttatgattagGTGGAGGCTTCGACGAACCAGGCGGCAGAACAACAGATGCCTCTCTATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctgttgagatattttctaatgaactttgtcggtttccattgttttatgattagGTGGAGGCTTCGACGAACCAGGCGGCAGAACAACAGATGCCTCTCTATGATCTTCCGTCAAAGCTTCTCTGTCGAGTTATTAATGTAGATTTAAAG
               ttctaat  putative branch site (score: 2)
                                        ttgtttt  putative PPT
          atattttctaatgaa  TA-rich tract