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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtcttccccttccactgtagtacacatagtagtgcgtctgaaacttaattgaacttgtcagtgggagtctaattcattgtacacaaaacagGTACAACTAAGGCAAACATGGACCCTTTACCAGCAAGCGGACTTTCAAGGGTCTTGCAAGGTCAAGAATACTCGACCTTGAGGACGAAACATACTGAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G62000.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125160775|gb|EL188206.1|EL188206
EST:     ATCAAATATAGCACCTTCATCTCCTGACTCTTCGATGCTTACCAGAGAAG                         GTACAACTAAGGCAAACATGGACCCTTTACCAGCAAGCGGACTTTCGAAGG
genomic: ATCAAATATAGCACCTTCATCTCCTGACTCTTCGATGCTTACCAGAGAAGgtaatgtctt ... cacaaaacagGTACAACTAAGGCAAACATGGACCCTTTACCAGCAAGCGGACTTTC-AAGG
EST: gi|116434213|gb|EG476805.1|EG476805
EST:     ATCAAATATAGCACCTTCATCTCCTGACTCTTCGATGCTTACCAGAGAAG                         GTACAACTAAG-CAAACATGGACCCTTTACCAGCAAGCGGACTTTCAAGGG
genomic: ATCAAATATAGCACCTTCATCTCCTGACTCTTCGATGCTTACCAGAGAAGgtaatgtctt ... cacaaaacagGTACAACTAAGGCAAACATGGACCCTTTACCAGCAAGCGGACTTTCAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaaacttaattgaacttgtcagtgggagtctaattcattgtacacaaaacagGTACAACTAAGGCAAACATGGACCCTTTACCAGCAAGCGGACTTTCAAGGGTCTTGCAAGGTCAAGAATACTCGACCTTGAGGACGAAACATACTGAGAG
                              gtctaat  putative branch site (score: 3)
     aacttaatt  TA-rich tract