1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTGAGTTCAATGGAGAGTTGATGGCTCCTAAGAAAGATTGGTTGATAGTTTACACAGATGAAGAGAATGATATGATGCTTGTTGGTGACGATCCTTGGCAgtaagattttgcaaattttccatcttagtttatatcgatgttagtgtttttcttataacactgacacaatgatctctcttgcag
species | Arabidopsis thaliana |
transcript | AT5G62000.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TACACAGATGAAGAGAATGATATGATGCTTGTTGGTGACGATCCTTGGCA GGAGTTTTGTTGCATGGTTCGCAAAATCTTCATATACACGAAAGAGGAAGTEST: gi|116434200|gb|EG476792.1|EG476792
genomic: TACACAGATGAAGAGAATGATATGATGCTTGTTGGTGACGATCCTTGGCAgtaagatttt ... tctcttgcagGGAGTTTTGTTGCATGGTTCGCAAAATCTTCATATACACGAAAGAGGAAGT
EST: TACACAGATGAAGAGAATGATATGATGCTTGTTGGTGACGATCCTTGGCA GGAGTTTTGTTGCATGGTTCGCAAAATCTTCATATACACGAAAGAGGAAGTEST: gi|124821714|gb|EH906580.1|EH906580
genomic: TACACAGATGAAGAGAATGATATGATGCTTGTTGGTGACGATCCTTGGCAgtaagatttt ... tctcttgcagGGAGTTTTGTTGCATGGTTCGCAAAATCTTCATATACACGAAAGAGGAAGT
EST: TATGATGCTTGTTGGTGACGATCCTTGGCA GGAGTTTTGTTGCATGGTTCGCAAAATCTTCATATACAACGAAAGAGGAAGEST: gi|124991908|gb|EL064177.1|EL064177
genomic: TATGATGCTTGTTGGTGACGATCCTTGGCAgtaagatttt ... tctcttgcagGGAGTTTTGTTGCATGGTTCGCAAAATCTTCATATACA-CGAAAGAGGAAG
EST: GAATGATATGATGCTTGTTGGTGACGATCCTTGGCA GGAGTTTTGTTGCATGGTTCGCAAAATCTT
genomic: GAATGATATGATGCTTGTTGGTGACGATCCTTGGCAgtaagatttt ... tctcttgcagGGAGTTTTGTTGCATGGTTCGCAAAATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGTTCAATGGAGAGTTGATGGCTCCTAAGAAAGATTGGTTGATAGTTTACACAGATGAAGAGAATGATATGATGCTTGTTGGTGACGATCCTTGGCAgtaagattttgcaaattttccatcttagtttatatcgatgttagtgtttttcttataacactgacacaatgatctctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA