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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATAGCTGCAATGATGCGTGCACAGGAGGCTGATCCCACAAATCTAGAGGTGCTTCTTGCGCTTGGTGTGAGTCATACCAACGgtcagtgcatgttatctagcaatatgtgtttgttttgttcacatatatggatacttgtggtcatacattttttggaattagattggtaattaaaatcttgttctctgtaactacag

Basic information

species Arabidopsis thaliana
transcript AT5G56290.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G56290.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os08g39080.1 (Oryza sativa), 5'ss of exon 10
GCAATAGCTGCAATGATGCGTGCACAGGAGGCTGATCCCACAAATCTAGAGGTGCTTCTTGCGCTTGGTGTGAGTCATACCAACGgtcagtgcatgttatctagcaatatgtgtttgttttgttcacatatatggatacttgtggtcatacattttttggaattagattggtaattaaaatcttgttctctgtaactacag
||||| || ||||||||||||||||| || |||||||| ||||| || || || |||||||| |||||||| ||||| || || ||| |||||||| ||  |  || | |  |   |  |  |  ||  | |||  | ||    |  ||  |        |||||   |   || |||     | | |||           
GCAATCGCAGCAATGATGCGTGCACAAGAAGCTGATCCAACAAACCTGGAAGTTCTTCTTGCACTTGGTGTCAGTCACACGAATGgtgagtgcatggtaatt--cagtgtccg---gcataatctactaagatgc-tcctgaaagaaatgaagcggcataaattatggttagaagtaacgaggtttcctca----------

upper sequence: AT5G56290.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv19s0015g01940.t01 (Vitis vinifera), 5'ss of exon 10
GCAATAGCTGCAATGATGCGTGCACAGGAGGCTGATCCCACAAATCTAGAGGTGCTTCTTGCGCTTGGTGTGAGTCATACCAACGgtcagtgcatgttatctagcaatatgtgtttgttttgttcacatatatggatacttgtggtcatacattttttggaatta-gattggtaattaaaatcttgttctctg-taactacag
|| || ||  | |||||||||||||| || | ||| || ||||| || || ||||||||||||||||| ||||||||||| || ||| ||||  || | || |               ||| |||||| | | |   |  | |  | | | ||   || |||| | |||| ||| | |  ||  || |    |  || ||   
GCTATTGCATCCATGATGCGTGCACAAGAAGTTGAGCCAACAAACCTGGAAGTGCTTCTTGCGCTTGGCGTGAGTCATACAAATGgttagtgtttgctttcca---------------tttattcaca-agaagtgaaaatataattacaaatacatttgaatgatgattagtagtaaccattatgcttatagacaagtaa--