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...ttcttcgattatgtcaagtgatttggctgacaattgtttaaaggtttaaaatttcctgagaatttgaagaaatgttgatgattggtgatttgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAATTTTACTCTGAAGACCAACAGATAAGGTCACTTCCTGGTTCTGAGTTAG
species | Arabidopsis thaliana |
transcript | AT5G56290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAG GAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTGGGCCACAAEST: gi|86063591|gb|DR359348.1|DR359348
genomic: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAGgttagcttcc ... tgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAA
EST: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAG GAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTGGGCCACAAEST: gi|86063590|gb|DR359347.1|DR359347
genomic: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAGgttagcttcc ... tgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAA
EST: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAG GAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTGGGCCACAAEST: gi|86063588|gb|DR359345.1|DR359345
genomic: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAGgttagcttcc ... tgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAA
EST: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAG GAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTGGGCCACAAEST: gi|124719355|gb|EH810757.1|EH810757
genomic: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAGgttagcttcc ... tgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAA
EST: CACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAG GAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAAEST: gi|116461838|gb|EG504430.1|EG504430
genomic: CACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAGgttagcttcc ... tgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAA
EST: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAG GAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAA
genomic: CTCTCGGAGCTCTCACCAACGCTTTACTTGGTTCGTCTTCCAAAACCCAGgttagcttcc ... tgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAA
ttaaaatttcctgagaatttgaagaaatgttgatgattggtgatttgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAATTTTACTCTGAAGACCAACAGATAAGGTCACTTCCTGGTTCTGAGTTAG
tgttgat putative branch site (score: 4)
aatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttcgattatgtcaagtgatttggctgacaattgtttaaaggtttaaaatttcctgagaatttgaagaaatgttgatgattggtgatttgttgtgcagGAAAGGCTCAAGGAGATACCTAATGCAAACCGGTCAGGTCCTCGGCCACAATTTTACTCTGAAGACCAACAGATAAGGTCACTTCCTGGTTCTGAGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - -gatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaat