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gtatgatatacttgcaccatatatgtgcatatacttggtaagttaagtttagctgtatttagtacttgaaattcatccaactgtttactgttttgaagGTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAATGCGTTGCAAGACTTCTCTGTGCTGATGATCAAAACAAAGCAGAAGAACTTC
species | Arabidopsis thaliana |
transcript | AT5G48090.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAG GTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAATGCEST: gi|116417915|gb|EG460507.1|EG460507
genomic: GCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAGgtatgatata ... tgttttgaagGTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAATGC
EST: GCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAG GTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAEST: gi|116417917|gb|EG460509.1|EG460509
genomic: GCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAGgtatgatata ... tgttttgaagGTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGA
EST: GCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAG GTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAATGC
genomic: GCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAGgtatgatata ... tgttttgaagGTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAATGC
taagtttagctgtatttagtacttgaaattcatccaactgtttactgttttgaagGTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAATGCGTTGCAAGACTTCTCTGTGCTGATGATCAAAACAAAGCAGAAGAACTTC
ctgtttt CT-rich tract
tatttagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatatacttgcaccatatatgtgcatatacttggtaagttaagtttagctgtatttagtacttgaaattcatccaactgtttactgttttgaagGTCTTCCCTTGCTCTGCGTCAAACTGTGGTCATTTCTACCATCCTGAATGCGTTGCAAGACTTCTCTGTGCTGATGATCAAAACAAAGCAGAAGAACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC