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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgaatcaactttagagtttctgttcaatatgcgattatggtgaggcttcatgctgaagttggtttgttacatatgtagGCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAG

Basic information

species Arabidopsis thaliana
transcript AT5G48090.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116417911|gb|EG460503.1|EG460503
EST:     TTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAG                         GCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGC
genomic: TTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAGgtactgtgaa ... acatatgtagGCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGC
EST: gi|116417919|gb|EG460511.1|EG460511
EST:     TTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAG                         GCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGC
genomic: TTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAGgtactgtgaa ... acatatgtagGCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGC
EST: gi|116417915|gb|EG460507.1|EG460507
EST:     TTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAG                         GCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGC
genomic: TTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAGgtactgtgaa ... acatatgtagGCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGC
EST: gi|116417917|gb|EG460509.1|EG460509
EST:     TTGAGACAGAGTGCGAATCGCCAGGATTCACTGATAAGACTCAAATTCAG                         GCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGC
genomic: TTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAGgtactgtgaa ... acatatgtagGCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatatgcgattatggtgaggcttcatgctgaagttggtttgttacatatgtagGCACTCGGGACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGCTATGCTTGTGGCGAATTGGGATCCTCTGATGAAAATTTCTCTCAACAG
                                           ttacatat  TA-rich tract