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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAAAAGCTTATGGAAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGgtacagctaccactcttttactcttttgtttgaagctgtttctaaaacatgacgtttccatggcag

Basic information

species Arabidopsis thaliana
transcript AT5G48090.2
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116390509|gb|EG433101.1|EG433101
EST:     TAGATCTCATCCCACCTAAG                         AACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
genomic: TAGATCTCATCCCACCTAAGgtacagctac ... tccatggcagAACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
EST: gi|116390557|gb|EG433149.1|EG433149
EST:     AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAG                         AACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
genomic: AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGgtacagctac ... tccatggcagAACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
EST: gi|116390564|gb|EG433156.1|EG433156
EST:     AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAG                         AACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
genomic: AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGgtacagctac ... tccatggcagAACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
EST: gi|116390511|gb|EG433103.1|EG433103
EST:     AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAG                         AACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
genomic: AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGgtacagctac ... tccatggcagAACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
EST: gi|116390558|gb|EG433150.1|EG433150
EST:     AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAG                         AACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
genomic: AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGgtacagctac ... tccatggcagAACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
EST: gi|116390510|gb|EG433102.1|EG433102
EST:     AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAG                         AACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
genomic: AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGgtacagctac ... tccatggcagAACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
EST: gi|116390522|gb|EG433114.1|EG433114
EST:     AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAG                         AACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG
genomic: AAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGgtacagctac ... tccatggcagAACAACTTCAATTTTGAGATGAGAGATTGGCTGAGTGTGAAGGAAGAAGAG