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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgtgctaataattccttaagcaatacctctgctattaggtaaattatcaaatataacattctcgaaggtttcagGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAAAAGCTTATGGAAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCA

Basic information

species Arabidopsis thaliana
transcript AT5G48090.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116390557|gb|EG433149.1|EG433149
EST:     ATTGTAGAGAGGCTCCACCGGTATGTCGAAAATGGCGATACG                         GTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
genomic: ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGgtaaatgtgc ... aaggtttcagGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
EST: gi|116390564|gb|EG433156.1|EG433156
EST:     ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACG                         GTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
genomic: ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGgtaaatgtgc ... aaggtttcagGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
EST: gi|116390511|gb|EG433103.1|EG433103
EST:     ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACG                         GTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
genomic: ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGgtaaatgtgc ... aaggtttcagGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
EST: gi|116390558|gb|EG433150.1|EG433150
EST:     ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACG                         GTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGGA
genomic: ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGgtaaatgtgc ... aaggtttcagGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
EST: gi|116390510|gb|EG433102.1|EG433102
EST:     ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACG                         GTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
genomic: ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGgtaaatgtgc ... aaggtttcagGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
EST: gi|116390522|gb|EG433114.1|EG433114
EST:     ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACG                         GTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA
genomic: ATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGgtaaatgtgc ... aaggtttcagGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatacctctgctattaggtaaattatcaaatataacattctcgaaggtttcagGTAGTCGACTTTTGCTGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAAAAGCTTATGGAAACGGGGAAAATATGCTTCTACAAAAACTTAGATCTCA
                               atataac  putative branch site (score: 3)
             tattaggtaaattatc  TA-rich tract