1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TAAGAACAAGTCTGGTTACTCTTCAGTTTCTTCACTTTGTTAAAAGGGATCCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGGgtatgattggaatagtttgtttttttgttatgttgttgtttttatgtcatatttgaaatcatgtgtttgttttgttgtttatttag
species | Arabidopsis thaliana |
transcript | AT5G48090.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGG GATCCAGCCTTCTGAGGATGACTTTTAGATCATGTTTCTTTACTCTGTGAAEST: gi|116417919|gb|EG460511.1|EG460511
genomic: CCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGGgtatgattgg ... gtttatttagGATCCAGCCTTCTGAGGATGACTTTTAGATCATGTTTCTTTACTCTGTGAA
EST: CCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGG GATCCAGCCTTCTGAGGATGACTTTTAGATCATGTTTCTTTACTCTGTGAAEST: gi|116417915|gb|EG460507.1|EG460507
genomic: CCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGGgtatgattgg ... gtttatttagGATCCAGCCTTCTGAGGATGACTTTTAGATCATGTTTCTTTACTCTGTGAA
EST: CCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGG GATCCAGCCTTCTGAGGATGACTTTTAGATCATGTTTCTTTACTCTGTGAAEST: gi|116417917|gb|EG460509.1|EG460509
genomic: CCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGGgtatgattgg ... gtttatttagGATCCAGCCTTCTGAGGATGACTTTTAGATCATGTTTCTTTACTCTGTGAA
EST: CCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGG GATCCAGCCTTCTGAGGATGACTTTTAGATCATGTTTCTTTACTCTGTGAA
genomic: CCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGGgtatgattgg ... gtttatttagGATCCAGCCTTCTGAGGATGACTTTTAGATCATGTTTCTTTACTCTGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGAACAAGTCTGGTTACTCTTCAGTTTCTTCACTTTGTTAAAAGGGATCCGGATGTTGCAAGTGGTGATGTGTGGAGTAGTTTACAGAAAGTTCATGGgtatgattggaatagtttgtttttttgttatgttgttgtttttatgtcatatttgaaatcatgtgtttgttttgttgtttatttag
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