Sequence
atgc intronic sequence ATGC exonic sequenceGTTAAGGCAATGAGGGCTCTTCAATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGgttcaatattttcatgtgtaaatctgtaatatatgtctttgaatttcctctcatggcatggcatttcatggaaatttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G22770.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g02150.1 (Oryza sativa), 5'ss of exon 7
GTTAAGGCAATGAGGGCTCTTCAATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGgttcaa-tattttcatg--tgtaaatctgtaatatatgtctttgaatttcctctc--atggcatggcatttcatggaaatttcag
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GTTAAGACAATGAGGGCTCTTCAGTACTTCCCTACAATTGAAGATCCTGGCGCAAGACGAGCTTTATTTGAGgtacaactattttgactatttcacatctggtcttcacatatacaacacagttcttgaatgtaatgatacttctttcattcttcag
upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G700148_T01 (Zea mays), 5'ss of exon 7
GTTAAGGCAATGAGGGCTCTTCAATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGgttcaatattttcatgtgtaaatctgtaatatatgtctttgaatttcctctcatggcatggcatttcatggaaat--ttcag
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GTTAAGACAATGAGAGCTCTTCAGTACTTCCCTACCATTGAAGATCCCAACGCAAGACGGGCTTTGTTTGAGgtactaccttttctttta-acttttctagtgcacctgtacaaaaatgtgtggactgcaatg-attttgttgttgtccttcag
upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 8
GTTAAGGCAATGAGGGCTCTTCAATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGgttcaatattttcatgtgtaaatctgtaatatatgtctttgaatttcctctcatggcatggcatttcatggaaatttcag
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GTTAAGACAATGAGAGCTCTTCAGTACTTCCCTACCATTGAAGATCCCAACGCAAGACGAGCTTTGTTTGAGgtactacctttttttacttc--tctactgaacctgtactaaaatgtgtggat-tataatgatattattgtcatccttcag
upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 7
GTTAAGGCAATGAGGGCTCTTCAATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGgttcaatattttcatgtgtaaatctgtaatatatgtctttgaatttcctctcatggcatggcatttcatggaaatttcag
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GTGAAAACAATGAGGGCTCTTCAATATTTTCCTACCATTGAAGATCCTAATGCCAGAAGGTCATTGTTTGAGgtttg-taatatcaaattgacacatccaaaaactttctttagttaacaaattttagtg-agccttgattaatcatttcag
upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 7
GTTAAGGCAATGAGGGCTCTTCAATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGgttcaatattttcatgtgtaaatctgtaatatatgtctttgaatttcctctcatggcatggcatttcatggaaatttcag
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GTCAAAACAATGAGGGCTCTTCAATATTTTCCTACCATTGAAGATCCTAATGCAAGAAGGTCATTGTTTGAGgtttg-taatatcaaattgacacatccaaaaaaaaaaaaatagttaacaaattttagtgagccttgattaatcatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125195852|gb|EL210806.1|EL210806EST: AATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAG GTCCTTCAGCGAATATTGATGGGGACAG
genomic: AATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGgttcaatatt ... gaaatttcagGTCCTTCAGCGAATATTGATGGGGACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAAGGCAATGAGGGCTCTTCAATATTTCCCGACCATTGAAGATCCCAGTACCAGAAAAGCTCTGTTTGAGgttcaatattttcatgtgtaaatctgtaatatatgtctttgaatttcctctcatggcatggcatttcatggaaatttcag
- - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGA