Sequence
atgc intronic sequence ATGC exonic sequenceGAAAATATGACGCGGATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTCAGATAATCACCTCCTTGAAAGACCCTGACATCAGgttggtttagatttgccatctaagcatcagcttttctggcttgtgaacccggatcagtatctcgttactgttctaatttggaaccagtacgacagttttt...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G22770.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G22770.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 10
GAAAATATGACGCGGATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTCAGATAATCACCTCCTTGAAAGACCCTGACATCAGgttggtttagatttgccatctaagcatcagcttttctggcttgtgaacccggatcagtatctcgttactgttctaatttggaaccagtacgacagttttt-
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GAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATAAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAGgttacatctgttatcctatatgttgaacataattgatcctgtatatatcatcactaaaatactaa-attattttcatgcagaacccagcatttacttactg
upper sequence: AT5G22770.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 10
GAAAATATGACGCGGATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTCAGATAATCACCTCCTTGAAAGACCCTGACATCAGgttggtttagatttgccatcta--agcatcagcttttctggct-tgtgaacccggatcagtatctcgttactgttctaatttggaaccagtacgacagttttt
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GAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATTAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAGgttacatttgctatcctatatgttgacatcattgatcctgtatatatcatcactaa--attattttcatgcagaacccagcctttacttat-tggtaacatat
upper sequence: AT5G22770.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: PP1S507_6V6.1 (Physcomitrella patens), 5'ss of exon 10
GAAAATATGACGCGGATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTCAGATAATCACCTCCTTGAAAGACCCTGACATCAGgttggtttagatttgccatctaagcatcagcttttctggcttgtgaacccggatcagtatctcgttactgttctaatttggaaccagta--cgacagttttt---
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GAAAATATGACAAGGATGCTCCTAGTTGTAGATGTTCAGGATATAATTAAGAAACATCAAGCTCAGATAATCACTTCCCTGAAAGATCCCGATATCAGgtatttct---tttctcccataagca-cacgtaatttatgtagtcatttgacattagcctcac-tcttgatcttgcttttcaaccgctggttggcgcttttatcgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125302352|gb|EL316437.1|EL316437EST: AAAGACCCTGACATCAG TATTCGTAGGCGTGCTCTTGATTTATTATATGGGATGTGTGATGTGTCAAA
genomic: AAAGACCCTGACATCAGgttggtttag ... tttcctgcagTATTCGTAGGCGTGCTCTTGATTTATTATATGGGATGTGTGATGTGTCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAATATGACGCGGATGCTGATGGTCACAGATGTTCAAGATATCATAAAGAAGCATCAGTCTCAGATAATCACCTCCTTGAAAGACCCTGACATCAGgttggtttagatttgccatctaagcatcagcttttctggcttgtgaacccggatcagtatctcgttactgttctaatttggaaccagtacgacagttttt
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC