Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggacaacacaaatgttgaattgcgctcttctcgtctttgggtatgtcttaatagctttttttcgttttttttctcagGACTCCCACCATTCCTATTCTTCTTTCCACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAGAACTGCAAAAAAAAGTTTGGGCTGTATTT

Basic information

species Arabidopsis thaliana
transcript AT5G22770.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22770.2 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 15
gtaaggacaacacaaatgttgaattgcgctcttctcgtctttgggtatgtcttaa----tagcttttt----ttcgtttttt-ttctcagGACTCCCACCATTCCTATTCTTCTTTCCACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAGAACTGCAAAAAAAAGTTTGGGCTGTATTT
|||||  |  |  |    |  |  ||   |||| || | |  |       ||| |    |||  | ||      | | || |  | |||||||| | ||  |||||||||||||||| |||||||| ||| || | |||||| |||||||| | || |||||||| || ||  |  |||||||  |||| 
gtaagagct-cttagccttgcatctgttgtcttttcttatacgttctgcccttcaatcctaggatcttaaaacacatattgtactttcagGACTTCTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164166571|gb|ES207509.1|ES207509
EST:     AGTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCTAAAATATC                         GACTCCCACCATTCCTA
genomic: AGTGCAAGTGAACTCTTTAGCATCTTACATGAGAAGCTTCCTACAATATCgtaaggacaa ... tttttctcagGACTCCCACCATTCCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctcttctcgtctttgggtatgtcttaatagctttttttcgttttttttctcagGACTCCCACCATTCCTATTCTTCTTTCCACATATGCAAAGCTTCTTATGCACGCTCAACCCCCGGATCCAGAACTGCAAAAAAAAGTTTGGGCTGTATTT
                       tcttaat  putative branch site (score: 3)
                             tagctttttttcgttt  CT-rich tract
                                 tttttttcgttttttt  TA-rich tract