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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtataacactgtggggttactggttctttgattttactagtgcatctttcatattctctttgtcgtatacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG

Basic information

species Arabidopsis thaliana
transcript AT5G22770.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 5
------gtgtgtataacactgtggggttactggttctttgattttactagtgcatctttcatattctctttgtcgt---atacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG
       ||  | |||   ||   |  |||   || |||  || |  |  | | ||      ||  | || ||| |    ||| |  ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||||| ||  | ||||| || || |||||||| 
gtaaatttgaatgtaattttgcttgtatacactttttttctttattgttttccttcaaatgcatcttattagtccttttttaccttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 5
------gtgtgtataacactgtggggttactggttctttgattttactagtgcatctttcatattctctttgtcg---tatacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG
       ||  | |||   ||   |  |||   || |||  || |  |  |   ||      ||  | || |||    | ||  |  ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||||| ||  | ||||| || || |||||||| 
gtaaatttgaatgtaattttgctagtatacactttttttccttattgttttctttcaaatgcatcttattagtccctttttatcttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 5
-----------------gtgtgtataacactgtggggttactggttcttt--gattttactagtgcatctttcatattctctttgtcgtatac-ttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG
                    ||   |    |       |   ||||   |  ||| |  |   |  ||  ||       ||| | | | | || || |||| | ||||| ||||| || ||||| |||||||| ||||| ||||||||||| ||||| | ||| |||||||| ||| | ||||| || || ||||| || 
cttcttgtttcattatgaaatgggcattctttgaaacatgtgggttgcctaagatgtgtcctatttatgcttaggtgattctcttttgcaaacctttcagGTCAGATCGGATGGCGCAGCTTTTAGATGAACGTGATCTGGGTGTCTTGACATCTTCAATGAGCCTTCTTGTTGCTTTAGTATCAAACAACCATGATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttctttgattttactagtgcatctttcatattctctttgtcgtatacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG
    ctttgat  putative branch site (score: 5)
                                              tacttcc  putative PPT
     tttgatttta  TA-rich tract