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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAATGAGAACCATGACTTTTTGAAGTTGGCAATAAATACAGTGCGGAACGATATTATTGGTCGGAATGAGACTTTCCAGTGCCTAGCACTGACCTTGgtatgtggtcttttgtccaccctgtattgagattttagagcatagttaggttcttctgattataagatgttgttaaatgactgttttaatggaagtcttt...

Basic information

species Arabidopsis thaliana
transcript AT5G22770.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 3
GCTCAATGAGAACCATGACTTTTTGAAGTTGGCAATAAATACAGTGCGGAACGATATTATTGGTCGGAATGAGACTTTCCAGTGCCTAGCACTGACCTTGgtatgtggtcttttgtccaccctgtattgagattttagagcatagttaggttcttctgattataagatgttgttaaatgactgttttaatggaagtcttt------
||| ||||| || ||||||||| | | |||||| |||||||||||||| || ||||| |||||||| ||||| || |||||||| |||||| ||||  |||||||  ||  |      | | |  | ||  ||  |     | | ||  | |||||  |||| |  || ||   || |   | | ||        |||||      
GCTTAATGAAAATCATGACTTTCTCAGGTTGGCTATAAATACAGTGCGCAATGATATCATTGGTCGTAATGAAACCTTCCAGTGTCTAGCATTGACTATGgtatg--gtaatggaaaaaacttaaactgccatcctttcttagactt--gctcttcatatta-atcat-ttaacaattatgtatattcccctgtttcttttggtat

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 3
GCTCAATGAGAACCATGACTTTTTGAAGTTGGCAATAAATACAGTGCGGAACGATATTATTGGTCGGAATGAGACTTTCCAGTGCCTAGCACTGACCTTGgtatgtggtcttttgtccaccctgtattgagattttagagcatagttaggttcttctgatta------taagatgttgttaaatgactgttttaatggaagtcttt
||| ||||| || ||||||||| | | |||||| |||||||||||||| || ||||| |||||||| ||||| || |||||||| |||||| ||||  |||||||  ||  |      | | |  | ||  ||  |     | | ||  | |||||  ||||      |||||  |   || |  ||  | ||  |   ||| |  
GCTTAATGAAAATCATGACTTTCTCAGGTTGGCTATAAATACAGTGCGCAATGATATCATTGGTCGTAATGAAACCTTCCAGTGTCTAGCATTGACTATGgtatg--gtaatggaaaaaacttaaactgccatcctttcctagactt--gctcttcatattaatcatttaagaattatgtatactaccctgtttctcttagtat--

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 3
GCTCAATGAGAACCATGACTTTTTGAAGTTGGCAATAAATACAGTGCGGAACGATATTATTGGTCGGAATGAGACTTTCCAGTGCCTAGCACTGACCTTGgtatgtggtcttttgtccaccctgtattgagattttagagcatagttaggttctt-ctgattataagatgttgttaaatgactgttttaatggaagtcttt-----
 ||||||||||||||||||||||||| ||| ||||||||||| ||||| || ||||||||||| || ||||| |||||||||||| | ||  ||||  ||||||| |  | |     | |      || |  | | |||   || ||   |  ||  | ||| | | ||  ||| ||||     |      |||| |||||     
ACTCAATGAGAACCATGACTTTTTGAGGTTAGCAATAAATACTGTGCGCAATGATATTATTGGCCGAAATGAAACTTTCCAGTGCTTGGCTTTGACTATGgtatgggaacatgaaatctct-----tttacgtctcagatt-tatttgcttatttatttattttcaaattatgtgaaattttgctggaggcggaattctttttcct