1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgatctagaaatggatatagctgctaatttttctacctttatgttgttattatatagtaactcctttggcatgggttttgttttgcagGTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGAGAGCTGTATGCATGATCAGT
species | Arabidopsis thaliana |
transcript | AT5G19780.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTGCCGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTG GTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGTEST: gi|116406408|gb|EG449000.1|EG449000
genomic: GCTGCCGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGgtatgatcta ... tgttttgcagGTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGT
EST: GCTGCCGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTG GTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGTEST: gi|86059677|gb|DR355434.1|DR355434
genomic: GCTGCCGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGgtatgatcta ... tgttttgcagGTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGT
EST: GCTGCCGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTG GTGCCCAACTGGATTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGT
genomic: GCTGCCGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGgtatgatcta ... tgttttgcagGTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGT
tacctttatgttgttattatatagtaactcctttggcatgggttttgttttgcagGTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGAGAGCTGTATGCATGATCAGT
tagtaac putative branch site (score: 1)
ttttgtttt putative PPT
ttatgttgttattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatctagaaatggatatagctgctaatttttctacctttatgttgttattatatagtaactcctttggcatgggttttgttttgcagGTGCCCAACTGGGTTCAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGAGAGCTGTATGCATGATCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT