1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtataaaccctaattctctcttttatactctgtttctgtggatctgaaggtttttgagagacgaatgttttgctctgttgcagTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTCGAG
species | Arabidopsis thaliana |
transcript | AT5G19780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAG TGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAEST: gi|116402882|gb|EG445474.1|EG445474
genomic: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGgtataaaccc ... tctgttgcagTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGA
EST: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAG TGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAEST: gi|152038420|gb|AV822431.2|AV822431
genomic: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGgtataaaccc ... tctgttgcagTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGA
EST: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAG TGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAEST: gi|86072696|gb|DR368453.1|DR368453
genomic: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGgtataaaccc ... tctgttgcagTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGA
EST: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAG TGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAEST: gi|47828916|gb|CK118600.1|CK118600
genomic: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGgtataaaccc ... tctgttgcagTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGA
EST: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAG TGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGA
genomic: GAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGgtataaaccc ... tctgttgcagTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGA
tctgtttctgtggatctgaaggtttttgagagacgaatgttttgctctgttgcagTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTCGAG
ttttgctct CT-rich tract
aatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaaccctaattctctcttttatactctgtttctgtggatctgaaggtttttgagagacgaatgttttgctctgttgcagTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAGCGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT